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2023

.js-id-2023
WearMask: Fast In-browser Face Mask Detection with Serverless Edge Computing for COVID-19
Zekun Wang, Pengwei Wang, Peter C. Louis, Lee E. Wheless, Yuankai Huo
HPCI (2023)
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WearMask: Fast In-browser Face Mask Detection with Serverless Edge Computing for COVID-19
CircleSnake: Instance Segmentation with Circle Representation
Ethan H. Nguyen, Haichun Yang, Zuhayr Asad, Ruining Deng, Agnes B. Fogo, Yuankai Huo
MLMI (2022)
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CircleSnake: Instance Segmentation with Circle Representation
Compound Figure Separation of Biomedical Images: Mining Large Datasets for Self-supervised Learning
Tianyuan Yao, Yuzhe Lu, Jun Long, Aadarsh Jha, Zheyu Zhu, Zuhayr Asad, Haichun Yang, Agnes B. Fogo, Yuankai Huo
Journal of Machine Learning for Biomedical Imaging (2022)
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Compound Figure Separation of Biomedical Images: Mining Large Datasets for Self-supervised Learning
Cross-scale Attention Guided Multi-instance Learning for Crohns Disease Diagnosis with Pathological Images
Ruining Deng, Can Cui, Lucas W. Remedios, Shunxing Bao, R. Michael Womick, Sophie Chiron, Jia Li, Joseph T. Roland, Ken S. Lau, Qi Liu, Keith T. Wilson, Yaohong Wang, Lori A. Coburn, Bennett A. Landman, Yuankai Huo
MMMI (2022)
PDF
Cross-scale Attention Guided Multi-instance Learning for Crohns Disease Diagnosis with Pathological Images
Dense Multi-object 3D Glomerular Reconstruction and Quantification on 2D Serial Section Whole Slide Image
Ruining Deng, Haichun Yang, Zuhayr Asad, Zheyu Zhu, Shiru Wang, Lee E. Wheless, Agnes B. Fogo, Yuankai Huo
SPIE Medical Imaging (2022)
PDF
Dense Multi-object 3D Glomerular Reconstruction and Quantification on 2D Serial Section Whole Slide Image
Eosinophilic Esophagitis Multi-label Feature Recognition on Whole Slide Imaging using Transfer Learning
Yuxuan Shi, Quan Liu, Jiachen Xu, Zuhayr Asad, Can Cui, Hernán Correa, Yash Choksi, Girish Hiremath, Yuankai Huo
SPIE Medical Imaging (2022)
PDF
Eosinophilic Esophagitis Multi-label Feature Recognition on Whole Slide Imaging using Transfer Learning
Evaluating Transformer-based Semantic Segmentation Networks for Pathological Image Segmentation
Cam Nguyen, Zuhayr Asad, Ruining Deng, Yuankai Huo
SPIE Medical Imaging (2022)
PDF
Evaluating Transformer-based Semantic Segmentation Networks for Pathological Image Segmentation
Glo-In-One: Holistic Glomerular Detection, Segmentation, and Lesion Characterization with Large-scale Web Image Mining
Tianyuan Yao, Yuzhe Lu, Jun Long, Aadarsh Jha, Zheyu Zhu, Zuhayr Asad, Haichun Yang, Agnes B. Fogo, Yuankai Huo
Journal of Medical Imaging (2022)
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Glo-In-One: Holistic Glomerular Detection, Segmentation, and Lesion Characterization with Large-scale Web Image Mining
Holistic Fine-grained GGS Characterization: From Detection to Unbalanced Classification
Yuzhe Lu, Haichun Yang, Zuhayr Asad, Zheyu Zhu, Tianyuan Yao, Jiachen Xu, Agnes B. Fogo, Yuankai Huo
Journal of Medical Imaging (2022)
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Holistic Fine-grained GGS Characterization: From Detection to Unbalanced Classification
Inpainting Missing Tissue in Multiplexed Immunofluorescence Imaging
Shunxing Bao, Yucheng Tang, Ho Hin Lee, Riqiang Gao, Qi Yang, Xin Yu, Sophie Chiron, Lori A. Coburn, Keith T. Wilson, Joseph T. Roland, Bennett A. Landman, Yuankai Huo
SPIE Medical Imaging (2022)
PDF
Inpainting Missing Tissue in Multiplexed Immunofluorescence Imaging
Integrate Memory Efficiency Methods for Self-supervised Learning on Pathological Image Analysis
Quan Liu, Bryan A. Millis, Zuhayr Asad, Can Cui, William F. Dean, Isabelle T. Smith, Christopher Madden, Joseph T. Roland, Jeffrey P. Zwerner, Shilin Zhao, Lee E. Wheless, Yuankai Huo
SPIE Medical Imaging (2022)
PDF
Integrate Memory Efficiency Methods for Self-supervised Learning on Pathological Image Analysis
Large-Scale Patch-Wise Pathological Image Feature Dataset with a Hardware-agnostic Feature Extraction Tool
Zheyu Zhu, Ruining Deng, Quan Liu, Zuhayr Asad, Can Cui, Tianyuan Yao, Yuankai Huo
MIUA (2022)
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Large-Scale Patch-Wise Pathological Image Feature Dataset with a Hardware-agnostic Feature Extraction Tool
Leverage Supervised and Self-supervised Pretrain Models for Pathological Survival Analysis via a Simple and Low-cost Joint Representation Tuning
Quan Liu, Can Cui, Ruining Deng, Zuhayr Asad, Tianyuan Yao, Zheyu Zhu, Yuankai Huo
REMIA (2022)
PDF
Leverage Supervised and Self-supervised Pretrain Models for Pathological Survival Analysis via a Simple and Low-cost Joint Representation Tuning
MAg: a Simple Learning-based Patient-level Aggregation Method for Detecting Microsatellite Instability from Whole-slide Images
Kaifeng Pang, Zuhayr Asad, Shilin Zhao, Yuankai Huo
ISBI (2022)
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MAg: a Simple Learning-based Patient-level Aggregation Method for Detecting Microsatellite Instability from Whole-slide Images
Multi-modal Learning with Missing Data for Cancer Diagnosis using Histopathological and Genomic Data
Can Cui, Zuhayr Asad, William F. Dean, Isabelle T. Smith, Christopher Madden, Shunxing Bao, Bennett A. Landman, Joseph T. Roland, Lori A. Coburn, Keith T. Wilson, Jeffrey P. Zwerner, Shilin Zhao, Lee E. Wheless, Yuankai Huo
SPIE Medical Imaging (2022)
PDF
Multi-modal Learning with Missing Data for Cancer Diagnosis using Histopathological and Genomic Data
MxIF Q-score: Biology-Informed Quality Assurance for Multiplexed Immunofluorescence Imaging
Shunxing Bao, Jia Li, Can Cui, Yucheng Tang, Ruining Deng, Lucas W. Remedios, Ho Hin Lee, Sophie Chiron, Nathan Heath Patterson, Ken S. Lau, Lori A. Coburn, Keith T. Wilson, Joseph T. Roland, Bennett A. Landman, Qi Liu, Yuankai Huo
MOVI (2022)
PDF
MxIF Q-score: Biology-Informed Quality Assurance for Multiplexed Immunofluorescence Imaging
Omni-Seg: A Single Dynamic Network for Multi-label Renal Pathology Image Segmentation using Partially Labeled Data
Ruining Deng, Quan Liu, Can Cui, Zuhayr Asad, Haichun Yang, Yuankai Huo
MIDL (2022)
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Omni-Seg: A Single Dynamic Network for Multi-label Renal Pathology Image Segmentation using Partially Labeled Data
Self-supervised Learning with Large-scale Web Image Mining for Characterizing Glomerular Lesion
Tianyuan Yao, Yuzhe Lu, Ruining Deng, Zheyu Zhu, Zuhayr Asad, Haichun Yang, Lee E. Wheless, Agnes Fogo, Yuankai Huo
SPIE Medical Imaging (2022)
PDF
Self-supervised Learning with Large-scale Web Image Mining for Characterizing Glomerular Lesion
Survival Prediction of Brain Cancer with Incomplete Radiology, Pathology, Genomic, and Demographic Data
Can Cui, Han Liu, Quan Liu, Ruining Deng, Zuhayr Asad, Yaohong Wang, Shilin Zhao, Haichun Yang, Bennett A. Landman, Yuankai Huo
MICCAI (2022)
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Survival Prediction of Brain Cancer with Incomplete Radiology, Pathology, Genomic, and Demographic Data
Circle Representation for Medical Object Detection
Ethan H. Nguyen, Haichun Yang, Ruining Deng,Yuzhe Lu, Zheyu Zhu, Joseph T. Roland, Le Lu, BennettA. Landman, Agnes B. Fogo, Yuankai Huo
IEEE Transactions on Medical Imaging (2021)
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Circle Representation for Medical Object Detection
Faster Mean-shift: GPU-accelerated Embedding-clustering for Cell Segmentation and Tracking
Mengyang Zhao, Aadarsh Jha, Quan Liu, Bryan A. Millis, Anita Mahadevan-Jansen, Le Lu, Bennett A. Landman, Matthew J.Tyskac, Yuankai Huo
Medical Image Analysis (2021)
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Faster Mean-shift: GPU-accelerated Embedding-clustering for Cell Segmentation and Tracking
Map3D: Registration Based Multi-Object Tracking on 3D Serial Whole Slide Images
Ruining Deng, Haichun Yang, Aadarsh Jha, Yuzhe Lu, Peng Chu, Agnes Fogo, Yuankai Huo
IEEE Transactions on Medical Imaging (2021)
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Map3D: Registration Based Multi-Object Tracking on 3D Serial Whole Slide Images
SimTriplet: Simple Triplet Representation Learning with a Single GPU
Quan Liu, Peter C. Louis, Yuzhe Lu, Aadarsh Jha, Mengyang Zhao, Ruining Deng, Tianyuan Yao, Joseph T. Roland, Haichun Yang, Shilin Zhao, Lee E. Wheless, Yuankai Huo
MICCAI (2021)
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SimTriplet: Simple Triplet Representation Learning with a Single GPU
Pancreas CT Segmentation by Predictive Phenotyping
Yucheng Tang, Riqiang Gao, Ho Hin Lee, Qi Yang, Xin Yu, Yuyin Zhou, Shunxing Bao, Yuankai Huo, Jeffrey Spraggins, Jack Virostko, Zhoubing Xu, Bennet A. Landman
MICCAI (2021)
Pancreas CT Segmentation by Predictive Phenotyping
Lung Cancer Risk Estimation with Incomplete Data: A Joint Missing Imputation Perspective
Riqiang Gao, Yucheng Tang, Kaiwen Xu, Ho Hin Lee, Steve A. Deppen, Kim L. Sandler, Pierre P. Massion, Thomas A. Lasko, Yuankai Huo, Bennett A. Landman
MICCAI (2021)
PDF Code
Lung Cancer Risk Estimation with Incomplete Data: A Joint Missing Imputation Perspective
From Brain to Body: Learning Low-Frequency Respiration and Cardiac Signals from fMRI Dynamics
Roza Bayrak, Colin Hansen, Nafis Ahmed, Ilwoo Lyu, Yuankai Huo, Catie Chang
MICCAI (2021)
From Brain to Body: Learning Low-Frequency Respiration and Cardiac Signals from fMRI Dynamics
AI Applications in Renal Pathology
Yuankai Huo, Ruining Deng, Quan Liu, Agnes B. Fogo, Haichun Yang
Kidney International (2021)
PDF
AI Applications in Renal Pathology
ASIST: Annotation-free Synthetic Instance Segmentation and Tracking by Adversarial Simulations
Quan Liu, Isabella M. Gaeta, Mengyang Zhao, Ruining Deng; Aadarsh Jha, Bryan A. Millis, Anita Mahadevan-Jansen, Matthew J. Tyska, Yuankai Huo
Computers in Biology and Medicine (2021)
PDF
ASIST: Annotation-free Synthetic Instance Segmentation and Tracking by Adversarial Simulations
BEDs: Bagging Ensemble Deep Segmentation for Nucleus Segmentation with Testing Stage Stain Augmentation
Xing Li, Haichun Yang, Jiaxin He, Aadarsh Jha, Agnes B. Fogo, Lee E. Wheless, Shilin Zhao, Yuankai Huo
ISBI (2021)
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BEDs: Bagging Ensemble Deep Segmentation for Nucleus Segmentation with Testing Stage Stain Augmentation
Compound Figure Separation of Biomedical Images with Side Loss
Tianyuan Yao, Chang Qu, Quan Liu, Ruining Deng, Yuanhan Tian, Jiachen Xu, Aadarsh Jha, Shunxing Bao, Mengyang Zhao, Agnes B Fogo, Bennett A Landman, Catie Chang, Haichun Yang, Yuankai Huo
DALI (2021)
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Compound Figure Separation of Biomedical Images with Side Loss
VoxelEmbed: 3D Instance Segmentation and Tracking with Voxel Embedding based Deep Learning
Mengyang Zhao, Quan Liu, Aadarsh Jha, Ruining Deng, Tianyuan Yao, Anita Mahadevan-Jansen, Matthew J.Tyska, Bryan A. Millis, Yuankai Huo
MLMI (2021)
PDF
VoxelEmbed: 3D Instance Segmentation and Tracking with Voxel Embedding based Deep Learning
CaCL: Class-aware Codebook Learning for Weakly Supervised Segmentation on Diffuse Image Patterns
Ruining Deng, Quan Liu, Shunxing Bao, Aadarsh Jha, Catie Chang, Bryan A Millis, Matthew J Tyska, Yuankai Huo
DGM4MICCAI 2021 (2021)
PDF Code
CaCL: Class-aware Codebook Learning for Weakly Supervised Segmentation on Diffuse Image Patterns
Random Multi-Channel Image Synthesis for Multiplexed Immunofluorescence Imaging
Shunxing Bao, Yucheng Tang, Ho Hin Lee, Riqiang Gao, Sophie Chiron, Ilwoo Lyu, Lori A. Coburn, Keith T. Wilson, Joseph T. Roland, Bennett A. Landman, Yuankai Huo
COMPAY (2021)
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Random Multi-Channel Image Synthesis for Multiplexed Immunofluorescence Imaging
A Limitation of Acyclic Oriented Graphs Matching as Cell Tracking Accuracy Measure when Evaluating Mitosis
Ye Chen, Yuankai Huo
SPIE (2021)
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A Limitation of Acyclic Oriented Graphs Matching as Cell Tracking Accuracy Measure when Evaluating Mitosis
GAN based Unsupervised Segmentation: Should We Match the Exact Number of Objects
Quan Liu, Isabella M. Gaeta, Bryan A. Millis, Matthew J. Tyska, Yuankai Huo
SPIE (2021)
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GAN based Unsupervised Segmentation: Should We Match the Exact Number of Objects
Improve Global Glomerulosclerosis Classification with Imbalanced Data using CircleMix Augmentation
Yuzhe Lu, Haichun Yang, Zheyu Zhu, Ruining Deng, Agnes B. Fogo, Yuankai Huo
SPIE (2021)
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Improve Global Glomerulosclerosis Classification with Imbalanced Data using CircleMix Augmentation
Measure Partial Liver Volumetric Variations from Paired Inspiratory-expiratory Chest CT Scans
Can Luo, James G. Terry, Yucheng Tang, Kaiwen Xu, Pierre P. Massion, Bennett A. Landman, J. Jeffery Carr, Yuankai Huo
SPIE (2021)
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Measure Partial Liver Volumetric Variations from Paired Inspiratory-expiratory Chest CT Scans
Instance Segmentation for Whole Slide Imaging: End-to-End or Detect-Then-Segment
Aadarsh Jha, Haichun Yang, Ruining Deng, Meghan E. Kapp, Agnes B. Fogo, Yuankai Huo
Journal of Medical Imaging (2020)
PDF
Instance Segmentation for Whole Slide Imaging: End-to-End or Detect-Then-Segment
CircleNet: Anchor-free Detection with Circle Representation
Haichun Yang, Ruining Deng, Yuzhe Lu, Zheyu Zhu, Ye Chen, Joseph T. Roland, Le Lu, Bennett A. Landman, Agnes B. Fogo, Yuankai Huo
MICCAI (2020)
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CircleNet: Anchor-free Detection with Circle Representation
A Deep Pattern Recognition Approach for Inferring Respiratory Volume Fluctuations from fMRI Data
Roza Bayrak, Jorge Salas, Yuankai Huo, Catie Chang
MICCAI (2020)
A Deep Pattern Recognition Approach for Inferring Respiratory Volume Fluctuations from fMRI Data
Reliable Liver Fibrosis Assessment from Ultrasound using Global Hetero-Image Fusion and View-Specific Parameterization
Bowen Li, Ke Yan, Dar‐In Tai, Yuankai Huo, Le Lu, Jing Xiao, Adam Harrison
MICCAI (2020)
Reliable Liver Fibrosis Assessment from Ultrasound using Global Hetero-Image Fusion and View-Specific Parameterization
Lesion Harvester: Iteratively Mining Unlabeled Lesions and Hard-Negative Examples at Scale
Jinzheng Cai, Adam P. Harrison, Youjing Zheng, Ke Yan, Yuankai Huo, Jing Xiao, Lin Yang, Le Lu
IEEE Transactions on Medical Imaging (2020)
Lesion Harvester: Iteratively Mining Unlabeled Lesions and Hard-Negative Examples at Scale
Harvesting, Detecting, and Characterizing Liver Lesions from Large-scale Multi-phase CT Data via Deep Dynamic Texture Learning
Yuankai Huo, Jinzheng Cai, Chi-Tung Cheng, Ashwin Raju, Ke Yan, Bennett A. Landman, Jing Xiao, Le Lu, Chien-Hung Liao, Adam Harrison
ArXiv (2020)
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Harvesting, Detecting, and Characterizing Liver Lesions from Large-scale Multi-phase CT Data via Deep Dynamic Texture Learning
The Value of Nullspace Tuning Using Partial Label Information
Colin B. Hansen, Vishwesh Nath, Diego A. Mesa, Yuankai Huo, Bennett A. Landman, Thomas A. Lasko
ArXiv (2020)
The Value of Nullspace Tuning Using Partial Label Information
Co-Heterogeneous and Adaptive Segmentation from Multi-Source and Multi-Phase CT Imaging Data: A Study on Pathological Liver and Lesion Segmentation
Ashwin Raju, Chi-Tung Cheng, Yuankai Huo, Jinzheng Cai, Junzhou Huang, Jing Xiao, Le Lu, ChienHung Liao, Adam P Harrison
ECCV (2020)
Co-Heterogeneous and Adaptive Segmentation from Multi-Source and Multi-Phase CT Imaging Data: A Study on Pathological Liver and Lesion Segmentation
JSSR: A Joint Synthesis, Segmentation, and Registration System for 3D Multi-Modal Image Alignment of Large-scale Pathological CT Scans
Fengze Liu, Jingzheng Cai, Yuankai Huo, Chi-Tung Cheng, Ashwin Raju, Dakai Jin, Jing Xiao, Alan Yuille, Le Lu, ChienHung Liao, Adam P Harrison
ECCV (2020)
JSSR: A Joint Synthesis, Segmentation, and Registration System for 3D Multi-Modal Image Alignment of Large-scale Pathological CT Scans

2022

.js-id-2022
WearMask: Fast In-browser Face Mask Detection with Serverless Edge Computing for COVID-19
Zekun Wang, Pengwei Wang, Peter C. Louis, Lee E. Wheless, Yuankai Huo
HPCI (2023)
PDF Code
WearMask: Fast In-browser Face Mask Detection with Serverless Edge Computing for COVID-19
CircleSnake: Instance Segmentation with Circle Representation
Ethan H. Nguyen, Haichun Yang, Zuhayr Asad, Ruining Deng, Agnes B. Fogo, Yuankai Huo
MLMI (2022)
PDF
CircleSnake: Instance Segmentation with Circle Representation
Compound Figure Separation of Biomedical Images: Mining Large Datasets for Self-supervised Learning
Tianyuan Yao, Yuzhe Lu, Jun Long, Aadarsh Jha, Zheyu Zhu, Zuhayr Asad, Haichun Yang, Agnes B. Fogo, Yuankai Huo
Journal of Machine Learning for Biomedical Imaging (2022)
PDF Code
Compound Figure Separation of Biomedical Images: Mining Large Datasets for Self-supervised Learning
Cross-scale Attention Guided Multi-instance Learning for Crohns Disease Diagnosis with Pathological Images
Ruining Deng, Can Cui, Lucas W. Remedios, Shunxing Bao, R. Michael Womick, Sophie Chiron, Jia Li, Joseph T. Roland, Ken S. Lau, Qi Liu, Keith T. Wilson, Yaohong Wang, Lori A. Coburn, Bennett A. Landman, Yuankai Huo
MMMI (2022)
PDF
Cross-scale Attention Guided Multi-instance Learning for Crohns Disease Diagnosis with Pathological Images
Dense Multi-object 3D Glomerular Reconstruction and Quantification on 2D Serial Section Whole Slide Image
Ruining Deng, Haichun Yang, Zuhayr Asad, Zheyu Zhu, Shiru Wang, Lee E. Wheless, Agnes B. Fogo, Yuankai Huo
SPIE Medical Imaging (2022)
PDF
Dense Multi-object 3D Glomerular Reconstruction and Quantification on 2D Serial Section Whole Slide Image
Eosinophilic Esophagitis Multi-label Feature Recognition on Whole Slide Imaging using Transfer Learning
Yuxuan Shi, Quan Liu, Jiachen Xu, Zuhayr Asad, Can Cui, Hernán Correa, Yash Choksi, Girish Hiremath, Yuankai Huo
SPIE Medical Imaging (2022)
PDF
Eosinophilic Esophagitis Multi-label Feature Recognition on Whole Slide Imaging using Transfer Learning
Evaluating Transformer-based Semantic Segmentation Networks for Pathological Image Segmentation
Cam Nguyen, Zuhayr Asad, Ruining Deng, Yuankai Huo
SPIE Medical Imaging (2022)
PDF
Evaluating Transformer-based Semantic Segmentation Networks for Pathological Image Segmentation
Glo-In-One: Holistic Glomerular Detection, Segmentation, and Lesion Characterization with Large-scale Web Image Mining
Tianyuan Yao, Yuzhe Lu, Jun Long, Aadarsh Jha, Zheyu Zhu, Zuhayr Asad, Haichun Yang, Agnes B. Fogo, Yuankai Huo
Journal of Medical Imaging (2022)
PDF Code
Glo-In-One: Holistic Glomerular Detection, Segmentation, and Lesion Characterization with Large-scale Web Image Mining
Holistic Fine-grained GGS Characterization: From Detection to Unbalanced Classification
Yuzhe Lu, Haichun Yang, Zuhayr Asad, Zheyu Zhu, Tianyuan Yao, Jiachen Xu, Agnes B. Fogo, Yuankai Huo
Journal of Medical Imaging (2022)
PDF Code
Holistic Fine-grained GGS Characterization: From Detection to Unbalanced Classification
Inpainting Missing Tissue in Multiplexed Immunofluorescence Imaging
Shunxing Bao, Yucheng Tang, Ho Hin Lee, Riqiang Gao, Qi Yang, Xin Yu, Sophie Chiron, Lori A. Coburn, Keith T. Wilson, Joseph T. Roland, Bennett A. Landman, Yuankai Huo
SPIE Medical Imaging (2022)
PDF
Inpainting Missing Tissue in Multiplexed Immunofluorescence Imaging
Integrate Memory Efficiency Methods for Self-supervised Learning on Pathological Image Analysis
Quan Liu, Bryan A. Millis, Zuhayr Asad, Can Cui, William F. Dean, Isabelle T. Smith, Christopher Madden, Joseph T. Roland, Jeffrey P. Zwerner, Shilin Zhao, Lee E. Wheless, Yuankai Huo
SPIE Medical Imaging (2022)
PDF
Integrate Memory Efficiency Methods for Self-supervised Learning on Pathological Image Analysis
Large-Scale Patch-Wise Pathological Image Feature Dataset with a Hardware-agnostic Feature Extraction Tool
Zheyu Zhu, Ruining Deng, Quan Liu, Zuhayr Asad, Can Cui, Tianyuan Yao, Yuankai Huo
MIUA (2022)
PDF Code
Large-Scale Patch-Wise Pathological Image Feature Dataset with a Hardware-agnostic Feature Extraction Tool
Leverage Supervised and Self-supervised Pretrain Models for Pathological Survival Analysis via a Simple and Low-cost Joint Representation Tuning
Quan Liu, Can Cui, Ruining Deng, Zuhayr Asad, Tianyuan Yao, Zheyu Zhu, Yuankai Huo
REMIA (2022)
PDF
Leverage Supervised and Self-supervised Pretrain Models for Pathological Survival Analysis via a Simple and Low-cost Joint Representation Tuning
MAg: a Simple Learning-based Patient-level Aggregation Method for Detecting Microsatellite Instability from Whole-slide Images
Kaifeng Pang, Zuhayr Asad, Shilin Zhao, Yuankai Huo
ISBI (2022)
PDF Code
MAg: a Simple Learning-based Patient-level Aggregation Method for Detecting Microsatellite Instability from Whole-slide Images
Multi-modal Learning with Missing Data for Cancer Diagnosis using Histopathological and Genomic Data
Can Cui, Zuhayr Asad, William F. Dean, Isabelle T. Smith, Christopher Madden, Shunxing Bao, Bennett A. Landman, Joseph T. Roland, Lori A. Coburn, Keith T. Wilson, Jeffrey P. Zwerner, Shilin Zhao, Lee E. Wheless, Yuankai Huo
SPIE Medical Imaging (2022)
PDF
Multi-modal Learning with Missing Data for Cancer Diagnosis using Histopathological and Genomic Data
MxIF Q-score: Biology-Informed Quality Assurance for Multiplexed Immunofluorescence Imaging
Shunxing Bao, Jia Li, Can Cui, Yucheng Tang, Ruining Deng, Lucas W. Remedios, Ho Hin Lee, Sophie Chiron, Nathan Heath Patterson, Ken S. Lau, Lori A. Coburn, Keith T. Wilson, Joseph T. Roland, Bennett A. Landman, Qi Liu, Yuankai Huo
MOVI (2022)
PDF
MxIF Q-score: Biology-Informed Quality Assurance for Multiplexed Immunofluorescence Imaging
Omni-Seg: A Single Dynamic Network for Multi-label Renal Pathology Image Segmentation using Partially Labeled Data
Ruining Deng, Quan Liu, Can Cui, Zuhayr Asad, Haichun Yang, Yuankai Huo
MIDL (2022)
PDF Code
Omni-Seg: A Single Dynamic Network for Multi-label Renal Pathology Image Segmentation using Partially Labeled Data
Self-supervised Learning with Large-scale Web Image Mining for Characterizing Glomerular Lesion
Tianyuan Yao, Yuzhe Lu, Ruining Deng, Zheyu Zhu, Zuhayr Asad, Haichun Yang, Lee E. Wheless, Agnes Fogo, Yuankai Huo
SPIE Medical Imaging (2022)
PDF
Self-supervised Learning with Large-scale Web Image Mining for Characterizing Glomerular Lesion
Survival Prediction of Brain Cancer with Incomplete Radiology, Pathology, Genomic, and Demographic Data
Can Cui, Han Liu, Quan Liu, Ruining Deng, Zuhayr Asad, Yaohong Wang, Shilin Zhao, Haichun Yang, Bennett A. Landman, Yuankai Huo
MICCAI (2022)
PDF
Survival Prediction of Brain Cancer with Incomplete Radiology, Pathology, Genomic, and Demographic Data
Circle Representation for Medical Object Detection
Ethan H. Nguyen, Haichun Yang, Ruining Deng,Yuzhe Lu, Zheyu Zhu, Joseph T. Roland, Le Lu, BennettA. Landman, Agnes B. Fogo, Yuankai Huo
IEEE Transactions on Medical Imaging (2021)
PDF Code
Circle Representation for Medical Object Detection
Faster Mean-shift: GPU-accelerated Embedding-clustering for Cell Segmentation and Tracking
Mengyang Zhao, Aadarsh Jha, Quan Liu, Bryan A. Millis, Anita Mahadevan-Jansen, Le Lu, Bennett A. Landman, Matthew J.Tyskac, Yuankai Huo
Medical Image Analysis (2021)
PDF Code
Faster Mean-shift: GPU-accelerated Embedding-clustering for Cell Segmentation and Tracking
Map3D: Registration Based Multi-Object Tracking on 3D Serial Whole Slide Images
Ruining Deng, Haichun Yang, Aadarsh Jha, Yuzhe Lu, Peng Chu, Agnes Fogo, Yuankai Huo
IEEE Transactions on Medical Imaging (2021)
PDF Code
Map3D: Registration Based Multi-Object Tracking on 3D Serial Whole Slide Images
SimTriplet: Simple Triplet Representation Learning with a Single GPU
Quan Liu, Peter C. Louis, Yuzhe Lu, Aadarsh Jha, Mengyang Zhao, Ruining Deng, Tianyuan Yao, Joseph T. Roland, Haichun Yang, Shilin Zhao, Lee E. Wheless, Yuankai Huo
MICCAI (2021)
PDF Code
SimTriplet: Simple Triplet Representation Learning with a Single GPU
Pancreas CT Segmentation by Predictive Phenotyping
Yucheng Tang, Riqiang Gao, Ho Hin Lee, Qi Yang, Xin Yu, Yuyin Zhou, Shunxing Bao, Yuankai Huo, Jeffrey Spraggins, Jack Virostko, Zhoubing Xu, Bennet A. Landman
MICCAI (2021)
Pancreas CT Segmentation by Predictive Phenotyping
Lung Cancer Risk Estimation with Incomplete Data: A Joint Missing Imputation Perspective
Riqiang Gao, Yucheng Tang, Kaiwen Xu, Ho Hin Lee, Steve A. Deppen, Kim L. Sandler, Pierre P. Massion, Thomas A. Lasko, Yuankai Huo, Bennett A. Landman
MICCAI (2021)
PDF Code
Lung Cancer Risk Estimation with Incomplete Data: A Joint Missing Imputation Perspective
From Brain to Body: Learning Low-Frequency Respiration and Cardiac Signals from fMRI Dynamics
Roza Bayrak, Colin Hansen, Nafis Ahmed, Ilwoo Lyu, Yuankai Huo, Catie Chang
MICCAI (2021)
From Brain to Body: Learning Low-Frequency Respiration and Cardiac Signals from fMRI Dynamics
AI Applications in Renal Pathology
Yuankai Huo, Ruining Deng, Quan Liu, Agnes B. Fogo, Haichun Yang
Kidney International (2021)
PDF
AI Applications in Renal Pathology
ASIST: Annotation-free Synthetic Instance Segmentation and Tracking by Adversarial Simulations
Quan Liu, Isabella M. Gaeta, Mengyang Zhao, Ruining Deng; Aadarsh Jha, Bryan A. Millis, Anita Mahadevan-Jansen, Matthew J. Tyska, Yuankai Huo
Computers in Biology and Medicine (2021)
PDF
ASIST: Annotation-free Synthetic Instance Segmentation and Tracking by Adversarial Simulations
BEDs: Bagging Ensemble Deep Segmentation for Nucleus Segmentation with Testing Stage Stain Augmentation
Xing Li, Haichun Yang, Jiaxin He, Aadarsh Jha, Agnes B. Fogo, Lee E. Wheless, Shilin Zhao, Yuankai Huo
ISBI (2021)
PDF Code
BEDs: Bagging Ensemble Deep Segmentation for Nucleus Segmentation with Testing Stage Stain Augmentation
Compound Figure Separation of Biomedical Images with Side Loss
Tianyuan Yao, Chang Qu, Quan Liu, Ruining Deng, Yuanhan Tian, Jiachen Xu, Aadarsh Jha, Shunxing Bao, Mengyang Zhao, Agnes B Fogo, Bennett A Landman, Catie Chang, Haichun Yang, Yuankai Huo
DALI (2021)
PDF Code
Compound Figure Separation of Biomedical Images with Side Loss
VoxelEmbed: 3D Instance Segmentation and Tracking with Voxel Embedding based Deep Learning
Mengyang Zhao, Quan Liu, Aadarsh Jha, Ruining Deng, Tianyuan Yao, Anita Mahadevan-Jansen, Matthew J.Tyska, Bryan A. Millis, Yuankai Huo
MLMI (2021)
PDF
VoxelEmbed: 3D Instance Segmentation and Tracking with Voxel Embedding based Deep Learning
CaCL: Class-aware Codebook Learning for Weakly Supervised Segmentation on Diffuse Image Patterns
Ruining Deng, Quan Liu, Shunxing Bao, Aadarsh Jha, Catie Chang, Bryan A Millis, Matthew J Tyska, Yuankai Huo
DGM4MICCAI 2021 (2021)
PDF Code
CaCL: Class-aware Codebook Learning for Weakly Supervised Segmentation on Diffuse Image Patterns
Random Multi-Channel Image Synthesis for Multiplexed Immunofluorescence Imaging
Shunxing Bao, Yucheng Tang, Ho Hin Lee, Riqiang Gao, Sophie Chiron, Ilwoo Lyu, Lori A. Coburn, Keith T. Wilson, Joseph T. Roland, Bennett A. Landman, Yuankai Huo
COMPAY (2021)
PDF
Random Multi-Channel Image Synthesis for Multiplexed Immunofluorescence Imaging
A Limitation of Acyclic Oriented Graphs Matching as Cell Tracking Accuracy Measure when Evaluating Mitosis
Ye Chen, Yuankai Huo
SPIE (2021)
PDF
A Limitation of Acyclic Oriented Graphs Matching as Cell Tracking Accuracy Measure when Evaluating Mitosis
GAN based Unsupervised Segmentation: Should We Match the Exact Number of Objects
Quan Liu, Isabella M. Gaeta, Bryan A. Millis, Matthew J. Tyska, Yuankai Huo
SPIE (2021)
PDF
GAN based Unsupervised Segmentation: Should We Match the Exact Number of Objects
Improve Global Glomerulosclerosis Classification with Imbalanced Data using CircleMix Augmentation
Yuzhe Lu, Haichun Yang, Zheyu Zhu, Ruining Deng, Agnes B. Fogo, Yuankai Huo
SPIE (2021)
PDF
Improve Global Glomerulosclerosis Classification with Imbalanced Data using CircleMix Augmentation
Measure Partial Liver Volumetric Variations from Paired Inspiratory-expiratory Chest CT Scans
Can Luo, James G. Terry, Yucheng Tang, Kaiwen Xu, Pierre P. Massion, Bennett A. Landman, J. Jeffery Carr, Yuankai Huo
SPIE (2021)
PDF
Measure Partial Liver Volumetric Variations from Paired Inspiratory-expiratory Chest CT Scans
Instance Segmentation for Whole Slide Imaging: End-to-End or Detect-Then-Segment
Aadarsh Jha, Haichun Yang, Ruining Deng, Meghan E. Kapp, Agnes B. Fogo, Yuankai Huo
Journal of Medical Imaging (2020)
PDF
Instance Segmentation for Whole Slide Imaging: End-to-End or Detect-Then-Segment
CircleNet: Anchor-free Detection with Circle Representation
Haichun Yang, Ruining Deng, Yuzhe Lu, Zheyu Zhu, Ye Chen, Joseph T. Roland, Le Lu, Bennett A. Landman, Agnes B. Fogo, Yuankai Huo
MICCAI (2020)
PDF Code
CircleNet: Anchor-free Detection with Circle Representation
A Deep Pattern Recognition Approach for Inferring Respiratory Volume Fluctuations from fMRI Data
Roza Bayrak, Jorge Salas, Yuankai Huo, Catie Chang
MICCAI (2020)
A Deep Pattern Recognition Approach for Inferring Respiratory Volume Fluctuations from fMRI Data
Reliable Liver Fibrosis Assessment from Ultrasound using Global Hetero-Image Fusion and View-Specific Parameterization
Bowen Li, Ke Yan, Dar‐In Tai, Yuankai Huo, Le Lu, Jing Xiao, Adam Harrison
MICCAI (2020)
Reliable Liver Fibrosis Assessment from Ultrasound using Global Hetero-Image Fusion and View-Specific Parameterization
Lesion Harvester: Iteratively Mining Unlabeled Lesions and Hard-Negative Examples at Scale
Jinzheng Cai, Adam P. Harrison, Youjing Zheng, Ke Yan, Yuankai Huo, Jing Xiao, Lin Yang, Le Lu
IEEE Transactions on Medical Imaging (2020)
Lesion Harvester: Iteratively Mining Unlabeled Lesions and Hard-Negative Examples at Scale
Harvesting, Detecting, and Characterizing Liver Lesions from Large-scale Multi-phase CT Data via Deep Dynamic Texture Learning
Yuankai Huo, Jinzheng Cai, Chi-Tung Cheng, Ashwin Raju, Ke Yan, Bennett A. Landman, Jing Xiao, Le Lu, Chien-Hung Liao, Adam Harrison
ArXiv (2020)
PDF
Harvesting, Detecting, and Characterizing Liver Lesions from Large-scale Multi-phase CT Data via Deep Dynamic Texture Learning
The Value of Nullspace Tuning Using Partial Label Information
Colin B. Hansen, Vishwesh Nath, Diego A. Mesa, Yuankai Huo, Bennett A. Landman, Thomas A. Lasko
ArXiv (2020)
The Value of Nullspace Tuning Using Partial Label Information
Co-Heterogeneous and Adaptive Segmentation from Multi-Source and Multi-Phase CT Imaging Data: A Study on Pathological Liver and Lesion Segmentation
Ashwin Raju, Chi-Tung Cheng, Yuankai Huo, Jinzheng Cai, Junzhou Huang, Jing Xiao, Le Lu, ChienHung Liao, Adam P Harrison
ECCV (2020)
Co-Heterogeneous and Adaptive Segmentation from Multi-Source and Multi-Phase CT Imaging Data: A Study on Pathological Liver and Lesion Segmentation
JSSR: A Joint Synthesis, Segmentation, and Registration System for 3D Multi-Modal Image Alignment of Large-scale Pathological CT Scans
Fengze Liu, Jingzheng Cai, Yuankai Huo, Chi-Tung Cheng, Ashwin Raju, Dakai Jin, Jing Xiao, Alan Yuille, Le Lu, ChienHung Liao, Adam P Harrison
ECCV (2020)
JSSR: A Joint Synthesis, Segmentation, and Registration System for 3D Multi-Modal Image Alignment of Large-scale Pathological CT Scans

2021

.js-id-2021
WearMask: Fast In-browser Face Mask Detection with Serverless Edge Computing for COVID-19
Zekun Wang, Pengwei Wang, Peter C. Louis, Lee E. Wheless, Yuankai Huo
HPCI (2023)
PDF Code
WearMask: Fast In-browser Face Mask Detection with Serverless Edge Computing for COVID-19
CircleSnake: Instance Segmentation with Circle Representation
Ethan H. Nguyen, Haichun Yang, Zuhayr Asad, Ruining Deng, Agnes B. Fogo, Yuankai Huo
MLMI (2022)
PDF
CircleSnake: Instance Segmentation with Circle Representation
Compound Figure Separation of Biomedical Images: Mining Large Datasets for Self-supervised Learning
Tianyuan Yao, Yuzhe Lu, Jun Long, Aadarsh Jha, Zheyu Zhu, Zuhayr Asad, Haichun Yang, Agnes B. Fogo, Yuankai Huo
Journal of Machine Learning for Biomedical Imaging (2022)
PDF Code
Compound Figure Separation of Biomedical Images: Mining Large Datasets for Self-supervised Learning
Cross-scale Attention Guided Multi-instance Learning for Crohns Disease Diagnosis with Pathological Images
Ruining Deng, Can Cui, Lucas W. Remedios, Shunxing Bao, R. Michael Womick, Sophie Chiron, Jia Li, Joseph T. Roland, Ken S. Lau, Qi Liu, Keith T. Wilson, Yaohong Wang, Lori A. Coburn, Bennett A. Landman, Yuankai Huo
MMMI (2022)
PDF
Cross-scale Attention Guided Multi-instance Learning for Crohns Disease Diagnosis with Pathological Images
Dense Multi-object 3D Glomerular Reconstruction and Quantification on 2D Serial Section Whole Slide Image
Ruining Deng, Haichun Yang, Zuhayr Asad, Zheyu Zhu, Shiru Wang, Lee E. Wheless, Agnes B. Fogo, Yuankai Huo
SPIE Medical Imaging (2022)
PDF
Dense Multi-object 3D Glomerular Reconstruction and Quantification on 2D Serial Section Whole Slide Image
Eosinophilic Esophagitis Multi-label Feature Recognition on Whole Slide Imaging using Transfer Learning
Yuxuan Shi, Quan Liu, Jiachen Xu, Zuhayr Asad, Can Cui, Hernán Correa, Yash Choksi, Girish Hiremath, Yuankai Huo
SPIE Medical Imaging (2022)
PDF
Eosinophilic Esophagitis Multi-label Feature Recognition on Whole Slide Imaging using Transfer Learning
Evaluating Transformer-based Semantic Segmentation Networks for Pathological Image Segmentation
Cam Nguyen, Zuhayr Asad, Ruining Deng, Yuankai Huo
SPIE Medical Imaging (2022)
PDF
Evaluating Transformer-based Semantic Segmentation Networks for Pathological Image Segmentation
Glo-In-One: Holistic Glomerular Detection, Segmentation, and Lesion Characterization with Large-scale Web Image Mining
Tianyuan Yao, Yuzhe Lu, Jun Long, Aadarsh Jha, Zheyu Zhu, Zuhayr Asad, Haichun Yang, Agnes B. Fogo, Yuankai Huo
Journal of Medical Imaging (2022)
PDF Code
Glo-In-One: Holistic Glomerular Detection, Segmentation, and Lesion Characterization with Large-scale Web Image Mining
Holistic Fine-grained GGS Characterization: From Detection to Unbalanced Classification
Yuzhe Lu, Haichun Yang, Zuhayr Asad, Zheyu Zhu, Tianyuan Yao, Jiachen Xu, Agnes B. Fogo, Yuankai Huo
Journal of Medical Imaging (2022)
PDF Code
Holistic Fine-grained GGS Characterization: From Detection to Unbalanced Classification
Inpainting Missing Tissue in Multiplexed Immunofluorescence Imaging
Shunxing Bao, Yucheng Tang, Ho Hin Lee, Riqiang Gao, Qi Yang, Xin Yu, Sophie Chiron, Lori A. Coburn, Keith T. Wilson, Joseph T. Roland, Bennett A. Landman, Yuankai Huo
SPIE Medical Imaging (2022)
PDF
Inpainting Missing Tissue in Multiplexed Immunofluorescence Imaging
Integrate Memory Efficiency Methods for Self-supervised Learning on Pathological Image Analysis
Quan Liu, Bryan A. Millis, Zuhayr Asad, Can Cui, William F. Dean, Isabelle T. Smith, Christopher Madden, Joseph T. Roland, Jeffrey P. Zwerner, Shilin Zhao, Lee E. Wheless, Yuankai Huo
SPIE Medical Imaging (2022)
PDF
Integrate Memory Efficiency Methods for Self-supervised Learning on Pathological Image Analysis
Large-Scale Patch-Wise Pathological Image Feature Dataset with a Hardware-agnostic Feature Extraction Tool
Zheyu Zhu, Ruining Deng, Quan Liu, Zuhayr Asad, Can Cui, Tianyuan Yao, Yuankai Huo
MIUA (2022)
PDF Code
Large-Scale Patch-Wise Pathological Image Feature Dataset with a Hardware-agnostic Feature Extraction Tool
Leverage Supervised and Self-supervised Pretrain Models for Pathological Survival Analysis via a Simple and Low-cost Joint Representation Tuning
Quan Liu, Can Cui, Ruining Deng, Zuhayr Asad, Tianyuan Yao, Zheyu Zhu, Yuankai Huo
REMIA (2022)
PDF
Leverage Supervised and Self-supervised Pretrain Models for Pathological Survival Analysis via a Simple and Low-cost Joint Representation Tuning
MAg: a Simple Learning-based Patient-level Aggregation Method for Detecting Microsatellite Instability from Whole-slide Images
Kaifeng Pang, Zuhayr Asad, Shilin Zhao, Yuankai Huo
ISBI (2022)
PDF Code
MAg: a Simple Learning-based Patient-level Aggregation Method for Detecting Microsatellite Instability from Whole-slide Images
Multi-modal Learning with Missing Data for Cancer Diagnosis using Histopathological and Genomic Data
Can Cui, Zuhayr Asad, William F. Dean, Isabelle T. Smith, Christopher Madden, Shunxing Bao, Bennett A. Landman, Joseph T. Roland, Lori A. Coburn, Keith T. Wilson, Jeffrey P. Zwerner, Shilin Zhao, Lee E. Wheless, Yuankai Huo
SPIE Medical Imaging (2022)
PDF
Multi-modal Learning with Missing Data for Cancer Diagnosis using Histopathological and Genomic Data
MxIF Q-score: Biology-Informed Quality Assurance for Multiplexed Immunofluorescence Imaging
Shunxing Bao, Jia Li, Can Cui, Yucheng Tang, Ruining Deng, Lucas W. Remedios, Ho Hin Lee, Sophie Chiron, Nathan Heath Patterson, Ken S. Lau, Lori A. Coburn, Keith T. Wilson, Joseph T. Roland, Bennett A. Landman, Qi Liu, Yuankai Huo
MOVI (2022)
PDF
MxIF Q-score: Biology-Informed Quality Assurance for Multiplexed Immunofluorescence Imaging
Omni-Seg: A Single Dynamic Network for Multi-label Renal Pathology Image Segmentation using Partially Labeled Data
Ruining Deng, Quan Liu, Can Cui, Zuhayr Asad, Haichun Yang, Yuankai Huo
MIDL (2022)
PDF Code
Omni-Seg: A Single Dynamic Network for Multi-label Renal Pathology Image Segmentation using Partially Labeled Data
Self-supervised Learning with Large-scale Web Image Mining for Characterizing Glomerular Lesion
Tianyuan Yao, Yuzhe Lu, Ruining Deng, Zheyu Zhu, Zuhayr Asad, Haichun Yang, Lee E. Wheless, Agnes Fogo, Yuankai Huo
SPIE Medical Imaging (2022)
PDF
Self-supervised Learning with Large-scale Web Image Mining for Characterizing Glomerular Lesion
Survival Prediction of Brain Cancer with Incomplete Radiology, Pathology, Genomic, and Demographic Data
Can Cui, Han Liu, Quan Liu, Ruining Deng, Zuhayr Asad, Yaohong Wang, Shilin Zhao, Haichun Yang, Bennett A. Landman, Yuankai Huo
MICCAI (2022)
PDF
Survival Prediction of Brain Cancer with Incomplete Radiology, Pathology, Genomic, and Demographic Data
Circle Representation for Medical Object Detection
Ethan H. Nguyen, Haichun Yang, Ruining Deng,Yuzhe Lu, Zheyu Zhu, Joseph T. Roland, Le Lu, BennettA. Landman, Agnes B. Fogo, Yuankai Huo
IEEE Transactions on Medical Imaging (2021)
PDF Code
Circle Representation for Medical Object Detection
Faster Mean-shift: GPU-accelerated Embedding-clustering for Cell Segmentation and Tracking
Mengyang Zhao, Aadarsh Jha, Quan Liu, Bryan A. Millis, Anita Mahadevan-Jansen, Le Lu, Bennett A. Landman, Matthew J.Tyskac, Yuankai Huo
Medical Image Analysis (2021)
PDF Code
Faster Mean-shift: GPU-accelerated Embedding-clustering for Cell Segmentation and Tracking
Map3D: Registration Based Multi-Object Tracking on 3D Serial Whole Slide Images
Ruining Deng, Haichun Yang, Aadarsh Jha, Yuzhe Lu, Peng Chu, Agnes Fogo, Yuankai Huo
IEEE Transactions on Medical Imaging (2021)
PDF Code
Map3D: Registration Based Multi-Object Tracking on 3D Serial Whole Slide Images
SimTriplet: Simple Triplet Representation Learning with a Single GPU
Quan Liu, Peter C. Louis, Yuzhe Lu, Aadarsh Jha, Mengyang Zhao, Ruining Deng, Tianyuan Yao, Joseph T. Roland, Haichun Yang, Shilin Zhao, Lee E. Wheless, Yuankai Huo
MICCAI (2021)
PDF Code
SimTriplet: Simple Triplet Representation Learning with a Single GPU
Pancreas CT Segmentation by Predictive Phenotyping
Yucheng Tang, Riqiang Gao, Ho Hin Lee, Qi Yang, Xin Yu, Yuyin Zhou, Shunxing Bao, Yuankai Huo, Jeffrey Spraggins, Jack Virostko, Zhoubing Xu, Bennet A. Landman
MICCAI (2021)
Pancreas CT Segmentation by Predictive Phenotyping
Lung Cancer Risk Estimation with Incomplete Data: A Joint Missing Imputation Perspective
Riqiang Gao, Yucheng Tang, Kaiwen Xu, Ho Hin Lee, Steve A. Deppen, Kim L. Sandler, Pierre P. Massion, Thomas A. Lasko, Yuankai Huo, Bennett A. Landman
MICCAI (2021)
PDF Code
Lung Cancer Risk Estimation with Incomplete Data: A Joint Missing Imputation Perspective
From Brain to Body: Learning Low-Frequency Respiration and Cardiac Signals from fMRI Dynamics
Roza Bayrak, Colin Hansen, Nafis Ahmed, Ilwoo Lyu, Yuankai Huo, Catie Chang
MICCAI (2021)
From Brain to Body: Learning Low-Frequency Respiration and Cardiac Signals from fMRI Dynamics
AI Applications in Renal Pathology
Yuankai Huo, Ruining Deng, Quan Liu, Agnes B. Fogo, Haichun Yang
Kidney International (2021)
PDF
AI Applications in Renal Pathology
ASIST: Annotation-free Synthetic Instance Segmentation and Tracking by Adversarial Simulations
Quan Liu, Isabella M. Gaeta, Mengyang Zhao, Ruining Deng; Aadarsh Jha, Bryan A. Millis, Anita Mahadevan-Jansen, Matthew J. Tyska, Yuankai Huo
Computers in Biology and Medicine (2021)
PDF
ASIST: Annotation-free Synthetic Instance Segmentation and Tracking by Adversarial Simulations
BEDs: Bagging Ensemble Deep Segmentation for Nucleus Segmentation with Testing Stage Stain Augmentation
Xing Li, Haichun Yang, Jiaxin He, Aadarsh Jha, Agnes B. Fogo, Lee E. Wheless, Shilin Zhao, Yuankai Huo
ISBI (2021)
PDF Code
BEDs: Bagging Ensemble Deep Segmentation for Nucleus Segmentation with Testing Stage Stain Augmentation
Compound Figure Separation of Biomedical Images with Side Loss
Tianyuan Yao, Chang Qu, Quan Liu, Ruining Deng, Yuanhan Tian, Jiachen Xu, Aadarsh Jha, Shunxing Bao, Mengyang Zhao, Agnes B Fogo, Bennett A Landman, Catie Chang, Haichun Yang, Yuankai Huo
DALI (2021)
PDF Code
Compound Figure Separation of Biomedical Images with Side Loss
VoxelEmbed: 3D Instance Segmentation and Tracking with Voxel Embedding based Deep Learning
Mengyang Zhao, Quan Liu, Aadarsh Jha, Ruining Deng, Tianyuan Yao, Anita Mahadevan-Jansen, Matthew J.Tyska, Bryan A. Millis, Yuankai Huo
MLMI (2021)
PDF
VoxelEmbed: 3D Instance Segmentation and Tracking with Voxel Embedding based Deep Learning
CaCL: Class-aware Codebook Learning for Weakly Supervised Segmentation on Diffuse Image Patterns
Ruining Deng, Quan Liu, Shunxing Bao, Aadarsh Jha, Catie Chang, Bryan A Millis, Matthew J Tyska, Yuankai Huo
DGM4MICCAI 2021 (2021)
PDF Code
CaCL: Class-aware Codebook Learning for Weakly Supervised Segmentation on Diffuse Image Patterns
Random Multi-Channel Image Synthesis for Multiplexed Immunofluorescence Imaging
Shunxing Bao, Yucheng Tang, Ho Hin Lee, Riqiang Gao, Sophie Chiron, Ilwoo Lyu, Lori A. Coburn, Keith T. Wilson, Joseph T. Roland, Bennett A. Landman, Yuankai Huo
COMPAY (2021)
PDF
Random Multi-Channel Image Synthesis for Multiplexed Immunofluorescence Imaging
A Limitation of Acyclic Oriented Graphs Matching as Cell Tracking Accuracy Measure when Evaluating Mitosis
Ye Chen, Yuankai Huo
SPIE (2021)
PDF
A Limitation of Acyclic Oriented Graphs Matching as Cell Tracking Accuracy Measure when Evaluating Mitosis
GAN based Unsupervised Segmentation: Should We Match the Exact Number of Objects
Quan Liu, Isabella M. Gaeta, Bryan A. Millis, Matthew J. Tyska, Yuankai Huo
SPIE (2021)
PDF
GAN based Unsupervised Segmentation: Should We Match the Exact Number of Objects
Improve Global Glomerulosclerosis Classification with Imbalanced Data using CircleMix Augmentation
Yuzhe Lu, Haichun Yang, Zheyu Zhu, Ruining Deng, Agnes B. Fogo, Yuankai Huo
SPIE (2021)
PDF
Improve Global Glomerulosclerosis Classification with Imbalanced Data using CircleMix Augmentation
Measure Partial Liver Volumetric Variations from Paired Inspiratory-expiratory Chest CT Scans
Can Luo, James G. Terry, Yucheng Tang, Kaiwen Xu, Pierre P. Massion, Bennett A. Landman, J. Jeffery Carr, Yuankai Huo
SPIE (2021)
PDF
Measure Partial Liver Volumetric Variations from Paired Inspiratory-expiratory Chest CT Scans
Instance Segmentation for Whole Slide Imaging: End-to-End or Detect-Then-Segment
Aadarsh Jha, Haichun Yang, Ruining Deng, Meghan E. Kapp, Agnes B. Fogo, Yuankai Huo
Journal of Medical Imaging (2020)
PDF
Instance Segmentation for Whole Slide Imaging: End-to-End or Detect-Then-Segment
CircleNet: Anchor-free Detection with Circle Representation
Haichun Yang, Ruining Deng, Yuzhe Lu, Zheyu Zhu, Ye Chen, Joseph T. Roland, Le Lu, Bennett A. Landman, Agnes B. Fogo, Yuankai Huo
MICCAI (2020)
PDF Code
CircleNet: Anchor-free Detection with Circle Representation
A Deep Pattern Recognition Approach for Inferring Respiratory Volume Fluctuations from fMRI Data
Roza Bayrak, Jorge Salas, Yuankai Huo, Catie Chang
MICCAI (2020)
A Deep Pattern Recognition Approach for Inferring Respiratory Volume Fluctuations from fMRI Data
Reliable Liver Fibrosis Assessment from Ultrasound using Global Hetero-Image Fusion and View-Specific Parameterization
Bowen Li, Ke Yan, Dar‐In Tai, Yuankai Huo, Le Lu, Jing Xiao, Adam Harrison
MICCAI (2020)
Reliable Liver Fibrosis Assessment from Ultrasound using Global Hetero-Image Fusion and View-Specific Parameterization
Lesion Harvester: Iteratively Mining Unlabeled Lesions and Hard-Negative Examples at Scale
Jinzheng Cai, Adam P. Harrison, Youjing Zheng, Ke Yan, Yuankai Huo, Jing Xiao, Lin Yang, Le Lu
IEEE Transactions on Medical Imaging (2020)
Lesion Harvester: Iteratively Mining Unlabeled Lesions and Hard-Negative Examples at Scale
Harvesting, Detecting, and Characterizing Liver Lesions from Large-scale Multi-phase CT Data via Deep Dynamic Texture Learning
Yuankai Huo, Jinzheng Cai, Chi-Tung Cheng, Ashwin Raju, Ke Yan, Bennett A. Landman, Jing Xiao, Le Lu, Chien-Hung Liao, Adam Harrison
ArXiv (2020)
PDF
Harvesting, Detecting, and Characterizing Liver Lesions from Large-scale Multi-phase CT Data via Deep Dynamic Texture Learning
The Value of Nullspace Tuning Using Partial Label Information
Colin B. Hansen, Vishwesh Nath, Diego A. Mesa, Yuankai Huo, Bennett A. Landman, Thomas A. Lasko
ArXiv (2020)
The Value of Nullspace Tuning Using Partial Label Information
Co-Heterogeneous and Adaptive Segmentation from Multi-Source and Multi-Phase CT Imaging Data: A Study on Pathological Liver and Lesion Segmentation
Ashwin Raju, Chi-Tung Cheng, Yuankai Huo, Jinzheng Cai, Junzhou Huang, Jing Xiao, Le Lu, ChienHung Liao, Adam P Harrison
ECCV (2020)
Co-Heterogeneous and Adaptive Segmentation from Multi-Source and Multi-Phase CT Imaging Data: A Study on Pathological Liver and Lesion Segmentation
JSSR: A Joint Synthesis, Segmentation, and Registration System for 3D Multi-Modal Image Alignment of Large-scale Pathological CT Scans
Fengze Liu, Jingzheng Cai, Yuankai Huo, Chi-Tung Cheng, Ashwin Raju, Dakai Jin, Jing Xiao, Alan Yuille, Le Lu, ChienHung Liao, Adam P Harrison
ECCV (2020)
JSSR: A Joint Synthesis, Segmentation, and Registration System for 3D Multi-Modal Image Alignment of Large-scale Pathological CT Scans

2020

.js-id-2020
WearMask: Fast In-browser Face Mask Detection with Serverless Edge Computing for COVID-19
Zekun Wang, Pengwei Wang, Peter C. Louis, Lee E. Wheless, Yuankai Huo
HPCI (2023)
PDF Code
WearMask: Fast In-browser Face Mask Detection with Serverless Edge Computing for COVID-19
CircleSnake: Instance Segmentation with Circle Representation
Ethan H. Nguyen, Haichun Yang, Zuhayr Asad, Ruining Deng, Agnes B. Fogo, Yuankai Huo
MLMI (2022)
PDF
CircleSnake: Instance Segmentation with Circle Representation
Compound Figure Separation of Biomedical Images: Mining Large Datasets for Self-supervised Learning
Tianyuan Yao, Yuzhe Lu, Jun Long, Aadarsh Jha, Zheyu Zhu, Zuhayr Asad, Haichun Yang, Agnes B. Fogo, Yuankai Huo
Journal of Machine Learning for Biomedical Imaging (2022)
PDF Code
Compound Figure Separation of Biomedical Images: Mining Large Datasets for Self-supervised Learning
Cross-scale Attention Guided Multi-instance Learning for Crohns Disease Diagnosis with Pathological Images
Ruining Deng, Can Cui, Lucas W. Remedios, Shunxing Bao, R. Michael Womick, Sophie Chiron, Jia Li, Joseph T. Roland, Ken S. Lau, Qi Liu, Keith T. Wilson, Yaohong Wang, Lori A. Coburn, Bennett A. Landman, Yuankai Huo
MMMI (2022)
PDF
Cross-scale Attention Guided Multi-instance Learning for Crohns Disease Diagnosis with Pathological Images
Dense Multi-object 3D Glomerular Reconstruction and Quantification on 2D Serial Section Whole Slide Image
Ruining Deng, Haichun Yang, Zuhayr Asad, Zheyu Zhu, Shiru Wang, Lee E. Wheless, Agnes B. Fogo, Yuankai Huo
SPIE Medical Imaging (2022)
PDF
Dense Multi-object 3D Glomerular Reconstruction and Quantification on 2D Serial Section Whole Slide Image
Eosinophilic Esophagitis Multi-label Feature Recognition on Whole Slide Imaging using Transfer Learning
Yuxuan Shi, Quan Liu, Jiachen Xu, Zuhayr Asad, Can Cui, Hernán Correa, Yash Choksi, Girish Hiremath, Yuankai Huo
SPIE Medical Imaging (2022)
PDF
Eosinophilic Esophagitis Multi-label Feature Recognition on Whole Slide Imaging using Transfer Learning
Evaluating Transformer-based Semantic Segmentation Networks for Pathological Image Segmentation
Cam Nguyen, Zuhayr Asad, Ruining Deng, Yuankai Huo
SPIE Medical Imaging (2022)
PDF
Evaluating Transformer-based Semantic Segmentation Networks for Pathological Image Segmentation
Glo-In-One: Holistic Glomerular Detection, Segmentation, and Lesion Characterization with Large-scale Web Image Mining
Tianyuan Yao, Yuzhe Lu, Jun Long, Aadarsh Jha, Zheyu Zhu, Zuhayr Asad, Haichun Yang, Agnes B. Fogo, Yuankai Huo
Journal of Medical Imaging (2022)
PDF Code
Glo-In-One: Holistic Glomerular Detection, Segmentation, and Lesion Characterization with Large-scale Web Image Mining
Holistic Fine-grained GGS Characterization: From Detection to Unbalanced Classification
Yuzhe Lu, Haichun Yang, Zuhayr Asad, Zheyu Zhu, Tianyuan Yao, Jiachen Xu, Agnes B. Fogo, Yuankai Huo
Journal of Medical Imaging (2022)
PDF Code
Holistic Fine-grained GGS Characterization: From Detection to Unbalanced Classification
Inpainting Missing Tissue in Multiplexed Immunofluorescence Imaging
Shunxing Bao, Yucheng Tang, Ho Hin Lee, Riqiang Gao, Qi Yang, Xin Yu, Sophie Chiron, Lori A. Coburn, Keith T. Wilson, Joseph T. Roland, Bennett A. Landman, Yuankai Huo
SPIE Medical Imaging (2022)
PDF
Inpainting Missing Tissue in Multiplexed Immunofluorescence Imaging
Integrate Memory Efficiency Methods for Self-supervised Learning on Pathological Image Analysis
Quan Liu, Bryan A. Millis, Zuhayr Asad, Can Cui, William F. Dean, Isabelle T. Smith, Christopher Madden, Joseph T. Roland, Jeffrey P. Zwerner, Shilin Zhao, Lee E. Wheless, Yuankai Huo
SPIE Medical Imaging (2022)
PDF
Integrate Memory Efficiency Methods for Self-supervised Learning on Pathological Image Analysis
Large-Scale Patch-Wise Pathological Image Feature Dataset with a Hardware-agnostic Feature Extraction Tool
Zheyu Zhu, Ruining Deng, Quan Liu, Zuhayr Asad, Can Cui, Tianyuan Yao, Yuankai Huo
MIUA (2022)
PDF Code
Large-Scale Patch-Wise Pathological Image Feature Dataset with a Hardware-agnostic Feature Extraction Tool
Leverage Supervised and Self-supervised Pretrain Models for Pathological Survival Analysis via a Simple and Low-cost Joint Representation Tuning
Quan Liu, Can Cui, Ruining Deng, Zuhayr Asad, Tianyuan Yao, Zheyu Zhu, Yuankai Huo
REMIA (2022)
PDF
Leverage Supervised and Self-supervised Pretrain Models for Pathological Survival Analysis via a Simple and Low-cost Joint Representation Tuning
MAg: a Simple Learning-based Patient-level Aggregation Method for Detecting Microsatellite Instability from Whole-slide Images
Kaifeng Pang, Zuhayr Asad, Shilin Zhao, Yuankai Huo
ISBI (2022)
PDF Code
MAg: a Simple Learning-based Patient-level Aggregation Method for Detecting Microsatellite Instability from Whole-slide Images
Multi-modal Learning with Missing Data for Cancer Diagnosis using Histopathological and Genomic Data
Can Cui, Zuhayr Asad, William F. Dean, Isabelle T. Smith, Christopher Madden, Shunxing Bao, Bennett A. Landman, Joseph T. Roland, Lori A. Coburn, Keith T. Wilson, Jeffrey P. Zwerner, Shilin Zhao, Lee E. Wheless, Yuankai Huo
SPIE Medical Imaging (2022)
PDF
Multi-modal Learning with Missing Data for Cancer Diagnosis using Histopathological and Genomic Data
MxIF Q-score: Biology-Informed Quality Assurance for Multiplexed Immunofluorescence Imaging
Shunxing Bao, Jia Li, Can Cui, Yucheng Tang, Ruining Deng, Lucas W. Remedios, Ho Hin Lee, Sophie Chiron, Nathan Heath Patterson, Ken S. Lau, Lori A. Coburn, Keith T. Wilson, Joseph T. Roland, Bennett A. Landman, Qi Liu, Yuankai Huo
MOVI (2022)
PDF
MxIF Q-score: Biology-Informed Quality Assurance for Multiplexed Immunofluorescence Imaging
Omni-Seg: A Single Dynamic Network for Multi-label Renal Pathology Image Segmentation using Partially Labeled Data
Ruining Deng, Quan Liu, Can Cui, Zuhayr Asad, Haichun Yang, Yuankai Huo
MIDL (2022)
PDF Code
Omni-Seg: A Single Dynamic Network for Multi-label Renal Pathology Image Segmentation using Partially Labeled Data
Self-supervised Learning with Large-scale Web Image Mining for Characterizing Glomerular Lesion
Tianyuan Yao, Yuzhe Lu, Ruining Deng, Zheyu Zhu, Zuhayr Asad, Haichun Yang, Lee E. Wheless, Agnes Fogo, Yuankai Huo
SPIE Medical Imaging (2022)
PDF
Self-supervised Learning with Large-scale Web Image Mining for Characterizing Glomerular Lesion
Survival Prediction of Brain Cancer with Incomplete Radiology, Pathology, Genomic, and Demographic Data
Can Cui, Han Liu, Quan Liu, Ruining Deng, Zuhayr Asad, Yaohong Wang, Shilin Zhao, Haichun Yang, Bennett A. Landman, Yuankai Huo
MICCAI (2022)
PDF
Survival Prediction of Brain Cancer with Incomplete Radiology, Pathology, Genomic, and Demographic Data
Circle Representation for Medical Object Detection
Ethan H. Nguyen, Haichun Yang, Ruining Deng,Yuzhe Lu, Zheyu Zhu, Joseph T. Roland, Le Lu, BennettA. Landman, Agnes B. Fogo, Yuankai Huo
IEEE Transactions on Medical Imaging (2021)
PDF Code
Circle Representation for Medical Object Detection
Faster Mean-shift: GPU-accelerated Embedding-clustering for Cell Segmentation and Tracking
Mengyang Zhao, Aadarsh Jha, Quan Liu, Bryan A. Millis, Anita Mahadevan-Jansen, Le Lu, Bennett A. Landman, Matthew J.Tyskac, Yuankai Huo
Medical Image Analysis (2021)
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Faster Mean-shift: GPU-accelerated Embedding-clustering for Cell Segmentation and Tracking
Map3D: Registration Based Multi-Object Tracking on 3D Serial Whole Slide Images
Ruining Deng, Haichun Yang, Aadarsh Jha, Yuzhe Lu, Peng Chu, Agnes Fogo, Yuankai Huo
IEEE Transactions on Medical Imaging (2021)
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Map3D: Registration Based Multi-Object Tracking on 3D Serial Whole Slide Images
SimTriplet: Simple Triplet Representation Learning with a Single GPU
Quan Liu, Peter C. Louis, Yuzhe Lu, Aadarsh Jha, Mengyang Zhao, Ruining Deng, Tianyuan Yao, Joseph T. Roland, Haichun Yang, Shilin Zhao, Lee E. Wheless, Yuankai Huo
MICCAI (2021)
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SimTriplet: Simple Triplet Representation Learning with a Single GPU
Pancreas CT Segmentation by Predictive Phenotyping
Yucheng Tang, Riqiang Gao, Ho Hin Lee, Qi Yang, Xin Yu, Yuyin Zhou, Shunxing Bao, Yuankai Huo, Jeffrey Spraggins, Jack Virostko, Zhoubing Xu, Bennet A. Landman
MICCAI (2021)
Pancreas CT Segmentation by Predictive Phenotyping
Lung Cancer Risk Estimation with Incomplete Data: A Joint Missing Imputation Perspective
Riqiang Gao, Yucheng Tang, Kaiwen Xu, Ho Hin Lee, Steve A. Deppen, Kim L. Sandler, Pierre P. Massion, Thomas A. Lasko, Yuankai Huo, Bennett A. Landman
MICCAI (2021)
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Lung Cancer Risk Estimation with Incomplete Data: A Joint Missing Imputation Perspective
From Brain to Body: Learning Low-Frequency Respiration and Cardiac Signals from fMRI Dynamics
Roza Bayrak, Colin Hansen, Nafis Ahmed, Ilwoo Lyu, Yuankai Huo, Catie Chang
MICCAI (2021)
From Brain to Body: Learning Low-Frequency Respiration and Cardiac Signals from fMRI Dynamics
AI Applications in Renal Pathology
Yuankai Huo, Ruining Deng, Quan Liu, Agnes B. Fogo, Haichun Yang
Kidney International (2021)
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AI Applications in Renal Pathology
ASIST: Annotation-free Synthetic Instance Segmentation and Tracking by Adversarial Simulations
Quan Liu, Isabella M. Gaeta, Mengyang Zhao, Ruining Deng; Aadarsh Jha, Bryan A. Millis, Anita Mahadevan-Jansen, Matthew J. Tyska, Yuankai Huo
Computers in Biology and Medicine (2021)
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ASIST: Annotation-free Synthetic Instance Segmentation and Tracking by Adversarial Simulations
BEDs: Bagging Ensemble Deep Segmentation for Nucleus Segmentation with Testing Stage Stain Augmentation
Xing Li, Haichun Yang, Jiaxin He, Aadarsh Jha, Agnes B. Fogo, Lee E. Wheless, Shilin Zhao, Yuankai Huo
ISBI (2021)
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BEDs: Bagging Ensemble Deep Segmentation for Nucleus Segmentation with Testing Stage Stain Augmentation
Compound Figure Separation of Biomedical Images with Side Loss
Tianyuan Yao, Chang Qu, Quan Liu, Ruining Deng, Yuanhan Tian, Jiachen Xu, Aadarsh Jha, Shunxing Bao, Mengyang Zhao, Agnes B Fogo, Bennett A Landman, Catie Chang, Haichun Yang, Yuankai Huo
DALI (2021)
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Compound Figure Separation of Biomedical Images with Side Loss
VoxelEmbed: 3D Instance Segmentation and Tracking with Voxel Embedding based Deep Learning
Mengyang Zhao, Quan Liu, Aadarsh Jha, Ruining Deng, Tianyuan Yao, Anita Mahadevan-Jansen, Matthew J.Tyska, Bryan A. Millis, Yuankai Huo
MLMI (2021)
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VoxelEmbed: 3D Instance Segmentation and Tracking with Voxel Embedding based Deep Learning
CaCL: Class-aware Codebook Learning for Weakly Supervised Segmentation on Diffuse Image Patterns
Ruining Deng, Quan Liu, Shunxing Bao, Aadarsh Jha, Catie Chang, Bryan A Millis, Matthew J Tyska, Yuankai Huo
DGM4MICCAI 2021 (2021)
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CaCL: Class-aware Codebook Learning for Weakly Supervised Segmentation on Diffuse Image Patterns
Random Multi-Channel Image Synthesis for Multiplexed Immunofluorescence Imaging
Shunxing Bao, Yucheng Tang, Ho Hin Lee, Riqiang Gao, Sophie Chiron, Ilwoo Lyu, Lori A. Coburn, Keith T. Wilson, Joseph T. Roland, Bennett A. Landman, Yuankai Huo
COMPAY (2021)
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Random Multi-Channel Image Synthesis for Multiplexed Immunofluorescence Imaging
A Limitation of Acyclic Oriented Graphs Matching as Cell Tracking Accuracy Measure when Evaluating Mitosis
Ye Chen, Yuankai Huo
SPIE (2021)
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A Limitation of Acyclic Oriented Graphs Matching as Cell Tracking Accuracy Measure when Evaluating Mitosis
GAN based Unsupervised Segmentation: Should We Match the Exact Number of Objects
Quan Liu, Isabella M. Gaeta, Bryan A. Millis, Matthew J. Tyska, Yuankai Huo
SPIE (2021)
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GAN based Unsupervised Segmentation: Should We Match the Exact Number of Objects
Improve Global Glomerulosclerosis Classification with Imbalanced Data using CircleMix Augmentation
Yuzhe Lu, Haichun Yang, Zheyu Zhu, Ruining Deng, Agnes B. Fogo, Yuankai Huo
SPIE (2021)
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Improve Global Glomerulosclerosis Classification with Imbalanced Data using CircleMix Augmentation
Measure Partial Liver Volumetric Variations from Paired Inspiratory-expiratory Chest CT Scans
Can Luo, James G. Terry, Yucheng Tang, Kaiwen Xu, Pierre P. Massion, Bennett A. Landman, J. Jeffery Carr, Yuankai Huo
SPIE (2021)
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Measure Partial Liver Volumetric Variations from Paired Inspiratory-expiratory Chest CT Scans
Instance Segmentation for Whole Slide Imaging: End-to-End or Detect-Then-Segment
Aadarsh Jha, Haichun Yang, Ruining Deng, Meghan E. Kapp, Agnes B. Fogo, Yuankai Huo
Journal of Medical Imaging (2020)
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Instance Segmentation for Whole Slide Imaging: End-to-End or Detect-Then-Segment
CircleNet: Anchor-free Detection with Circle Representation
Haichun Yang, Ruining Deng, Yuzhe Lu, Zheyu Zhu, Ye Chen, Joseph T. Roland, Le Lu, Bennett A. Landman, Agnes B. Fogo, Yuankai Huo
MICCAI (2020)
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CircleNet: Anchor-free Detection with Circle Representation
A Deep Pattern Recognition Approach for Inferring Respiratory Volume Fluctuations from fMRI Data
Roza Bayrak, Jorge Salas, Yuankai Huo, Catie Chang
MICCAI (2020)
A Deep Pattern Recognition Approach for Inferring Respiratory Volume Fluctuations from fMRI Data
Reliable Liver Fibrosis Assessment from Ultrasound using Global Hetero-Image Fusion and View-Specific Parameterization
Bowen Li, Ke Yan, Dar‐In Tai, Yuankai Huo, Le Lu, Jing Xiao, Adam Harrison
MICCAI (2020)
Reliable Liver Fibrosis Assessment from Ultrasound using Global Hetero-Image Fusion and View-Specific Parameterization
Lesion Harvester: Iteratively Mining Unlabeled Lesions and Hard-Negative Examples at Scale
Jinzheng Cai, Adam P. Harrison, Youjing Zheng, Ke Yan, Yuankai Huo, Jing Xiao, Lin Yang, Le Lu
IEEE Transactions on Medical Imaging (2020)
Lesion Harvester: Iteratively Mining Unlabeled Lesions and Hard-Negative Examples at Scale
Harvesting, Detecting, and Characterizing Liver Lesions from Large-scale Multi-phase CT Data via Deep Dynamic Texture Learning
Yuankai Huo, Jinzheng Cai, Chi-Tung Cheng, Ashwin Raju, Ke Yan, Bennett A. Landman, Jing Xiao, Le Lu, Chien-Hung Liao, Adam Harrison
ArXiv (2020)
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Harvesting, Detecting, and Characterizing Liver Lesions from Large-scale Multi-phase CT Data via Deep Dynamic Texture Learning
The Value of Nullspace Tuning Using Partial Label Information
Colin B. Hansen, Vishwesh Nath, Diego A. Mesa, Yuankai Huo, Bennett A. Landman, Thomas A. Lasko
ArXiv (2020)
The Value of Nullspace Tuning Using Partial Label Information
Co-Heterogeneous and Adaptive Segmentation from Multi-Source and Multi-Phase CT Imaging Data: A Study on Pathological Liver and Lesion Segmentation
Ashwin Raju, Chi-Tung Cheng, Yuankai Huo, Jinzheng Cai, Junzhou Huang, Jing Xiao, Le Lu, ChienHung Liao, Adam P Harrison
ECCV (2020)
Co-Heterogeneous and Adaptive Segmentation from Multi-Source and Multi-Phase CT Imaging Data: A Study on Pathological Liver and Lesion Segmentation
JSSR: A Joint Synthesis, Segmentation, and Registration System for 3D Multi-Modal Image Alignment of Large-scale Pathological CT Scans
Fengze Liu, Jingzheng Cai, Yuankai Huo, Chi-Tung Cheng, Ashwin Raju, Dakai Jin, Jing Xiao, Alan Yuille, Le Lu, ChienHung Liao, Adam P Harrison
ECCV (2020)
JSSR: A Joint Synthesis, Segmentation, and Registration System for 3D Multi-Modal Image Alignment of Large-scale Pathological CT Scans