2022

CircleSnake: Instance Segmentation with Circle Representation

Ethan H. Nguyen, Haichun Yang, Zuhayr Asad, Ruining Deng, Agnes B. Fogo, **Yuankai Huo** ***MLMI*** **(2022)**

Compound Figure Separation of Biomedical Images: Mining Large Datasets for Self-supervised Learning

Tianyuan Yao, Yuzhe Lu, Jun Long, Aadarsh Jha, Zheyu Zhu, Zuhayr Asad, Haichun Yang, Agnes B. Fogo, **Yuankai Huo** ***Journal of Machine Learning for Biomedical Imaging*** **(2022)**

Cross-scale Attention Guided Multi-instance Learning for Crohns Disease Diagnosis with Pathological Images

Ruining Deng, Can Cui, Lucas W. Remedios, Shunxing Bao, R. Michael Womick, Sophie Chiron, Jia Li, Joseph T. Roland, Ken S. Lau, Qi Liu, Keith T. Wilson, Yaohong Wang, Lori A. Coburn, Bennett A. Landman, **Yuankai Huo** ***MMMI*** **(2022)**

Dense Multi-object 3D Glomerular Reconstruction and Quantification on 2D Serial Section Whole Slide Image

Ruining Deng, Haichun Yang, Zuhayr Asad, Zheyu Zhu, Shiru Wang, Lee E. Wheless, Agnes B. Fogo, **Yuankai Huo** ***SPIE Medical Imaging*** **(2022)**

Eosinophilic Esophagitis Multi-label Feature Recognition on Whole Slide Imaging using Transfer Learning

Yuxuan Shi, Quan Liu, Jiachen Xu, Zuhayr Asad, Can Cui, Hernán Correa, Yash Choksi, Girish Hiremath, **Yuankai Huo** ***SPIE Medical Imaging*** **(2022)**

Evaluating Transformer-based Semantic Segmentation Networks for Pathological Image Segmentation

Cam Nguyen, Zuhayr Asad, Ruining Deng, **Yuankai Huo** ***SPIE Medical Imaging*** **(2022)**

Glo-In-One: Holistic Glomerular Detection, Segmentation, and Lesion Characterization with Large-scale Web Image Mining

Tianyuan Yao, Yuzhe Lu, Jun Long, Aadarsh Jha, Zheyu Zhu, Zuhayr Asad, Haichun Yang, Agnes B. Fogo, **Yuankai Huo** ***Journal of Medical Imaging*** **(2022)**

Holistic Fine-grained GGS Characterization: From Detection to Unbalanced Classification

Yuzhe Lu, Haichun Yang, Zuhayr Asad, Zheyu Zhu, Tianyuan Yao, Jiachen Xu, Agnes B. Fogo, **Yuankai Huo** ***Journal of Medical Imaging*** **(2022)**

Inpainting Missing Tissue in Multiplexed Immunofluorescence Imaging

Shunxing Bao, Yucheng Tang, Ho Hin Lee, Riqiang Gao, Qi Yang, Xin Yu, Sophie Chiron, Lori A. Coburn, Keith T. Wilson, Joseph T. Roland, Bennett A. Landman, **Yuankai Huo** ***SPIE Medical Imaging*** **(2022)**

Integrate Memory Efficiency Methods for Self-supervised Learning on Pathological Image Analysis

Quan Liu, Bryan A. Millis, Zuhayr Asad, Can Cui, William F. Dean, Isabelle T. Smith, Christopher Madden, Joseph T. Roland, Jeffrey P. Zwerner, Shilin Zhao, Lee E. Wheless, **Yuankai Huo** ***SPIE Medical Imaging*** **(2022)**